PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.130030.1
Common NameCsa_4G312280
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 136aa    MW: 14606.4 Da    PI: 10.5995
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.130030.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.37.7e-105797954
                    HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                     r RR+ri ++f  L++l+P       +K++ +++L +A++Y+k L
  Cucsa.130030.1 57 ARERRHRISDRFKILQSLVPGG-----TKMDTVSMLDEAIHYVKFL 97
                    699*****************87.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.3584897IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.28E-1453109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-1254103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.31E-1254101No hitNo description
Gene3DG3DSA:4.10.280.103.4E-1254101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-75797IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MDYNFPASNP SSCGSSSGGG GGGGKEKMKK NNNNHGGAGK RSKGVVKLST DPQSVAARER  60
RHRISDRFKI LQSLVPGGTK MDTVSMLDEA IHYVKFLKTQ IWLHQTMINF VDYDSNSSAA  120
VSAAATANSE RWRKS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818840.0LN681884.1 Cucumis melo genomic scaffold, anchoredscaffold00086.
GenBankLN7132620.0LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008464215.16e-53PREDICTED: transcription factor bHLH140-like
SwissprotQ9M0413e-36BH140_ARATH; Transcription factor bHLH140
TrEMBLA0A0A0KXM02e-91A0A0A0KXM0_CUCSA; Uncharacterized protein
STRINGSolyc09g005070.1.13e-41(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71672846
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01310.14e-34APRATAXIN-like
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]